.. CCDpy documentation master file, created by
   sphinx-quickstart on Wed Mar 12 18:13:07 2025.
   You can adapt this file completely to your liking, but it should at least
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CCDpy documentation
===================

This is the documentation for the python implementation of conditional clade distributions (CCDs).


.. toctree::
   :maxdepth: 2
   :caption: Contents:

   readTrees
   labelTransmissionTrees
   transmissionCCD
   transcope