CLI for transmission CCD-MAP trees

This is the output of transcope --help:

usage: transcope [-h] -i INPUT_TREES [-o OUTPUT_TREE] [-b [BURN_IN]]
                 [-t {Blocks,Ancestry}] [-v] [--overwrite] [--seed SEED]

Transmission CCD MAP tree computation

options:
  -h, --help            show this help message and exit
  -i, --input-trees INPUT_TREES
                        Input tree file path
  -o, --output-tree OUTPUT_TREE
                        Output Tree file (default: standard output)
  -b, --burn-in [BURN_IN]
                        Burn-in proportion between 0.0 and 1.0 (default: 0.0))
  -t, --ccd-type {Blocks,Ancestry}
                        What type of transmission CCD (default: Ancestry)
  -v, --verbose         Enable verbose status output
  --overwrite           Overwrite existing output file
  --seed SEED           Random seed for CCD-MAP tree tiebreaking (default:
                        1337)