brokilon.ccd.domain.transmission package

Submodules

• brokilon.ccd.domain.transmission.find_infectors module
  • find_infector()
  • find_infector_unknown()
  • find_infector_with_data()
• brokilon.ccd.domain.transmission.io module
  • read_breath_nexus()
• brokilon.ccd.domain.transmission.label_transmission_history module
  • _label_all_nodes()
  • _label_all_remaining_unknowns()
  • _label_leaf_and_reachable_nodes()
  • _label_top_infected_nodes()
  • label_transmission_tree()
• brokilon.ccd.domain.transmission.transmission_ccd module
  • TypeCCD
    • TypeCCD.ANCESTRY
    • TypeCCD.BLOCKS
  • _add_internal_clade()
  • _add_leaf_clade()
  • _build_tree_dict_from_clade_splits()
  • _sanitize_transm_ancest()
  • get_transmission_map_tree()
  • get_transmission_maps()
  • median_sample()
  • sample_trees_from_transmission_ccd1()
  • transmission_tree_from_dict_of_splits()
• brokilon.ccd.domain.transmission.transmission_ccd0 module
  • compatible()
  • expand_tccd0()
  • get_map_tree()
  • get_transmission_ccd0()
  • get_tree_from_dict_of_splits()

Module contents