brokilon.ccd.domain.transmission package¶ Submodules¶ brokilon.ccd.domain.transmission.find_infectors module find_infector() find_infector_unknown() find_infector_with_data() brokilon.ccd.domain.transmission.io module read_breath_nexus() brokilon.ccd.domain.transmission.label_transmission_history module _label_all_nodes() _label_all_remaining_unknowns() _label_leaf_and_reachable_nodes() _label_top_infected_nodes() label_transmission_tree() brokilon.ccd.domain.transmission.transmission_ccd module TypeCCD TypeCCD.ANCESTRY TypeCCD.BLOCKS _add_internal_clade() _add_leaf_clade() _build_tree_dict_from_clade_splits() _sanitize_transm_ancest() get_transmission_map_tree() get_transmission_maps() median_sample() sample_trees_from_transmission_ccd1() transmission_tree_from_dict_of_splits() brokilon.ccd.domain.transmission.transmission_ccd0 module compatible() expand_tccd0() get_map_tree() get_transmission_ccd0() get_tree_from_dict_of_splits() Module contents¶