brokilon.majority_rule_consensus.majority_consensus module

brokilon.majority_rule_consensus.majority_consensus.phygeo_mrc(trees, geo_ann_str, major_thr=0.5)

Computes MRC tree for annotated trees (type is input value). Assumes leaves are fixed states.

Parameters:

• trees – list of trees

• geo_ann_str – annotation that should be used for clades

Returns:

MRC tree with annotations

brokilon.majority_rule_consensus.majority_consensus.regular_mrc(trees)

brokilon.majority_rule_consensus.majority_consensus.transmission_mrc(trees)