brokilon.core package

Submodules

• brokilon.core.read_nexus module
  • _cast_to_int()
  • _meta_label_nodes()
  • count_trees_in_nexus()
  • read_nexus_trees()
• brokilon.core.taxon_map_utils module
  • change_taxon_map()
  • get_mapping_dict()
• brokilon.core.tree module
  • NewickError
  • Tree
  • TreeError
  • TreeNode
    • TreeNode._iter_descendants_levelorder()
    • TreeNode._iter_descendants_postorder()
    • TreeNode._iter_descendants_preorder()
    • TreeNode.add_child()
    • TreeNode.add_feature()
    • TreeNode.add_features()
    • TreeNode.children
    • TreeNode.get_cached_content()
    • TreeNode.get_common_ancestor()
    • TreeNode.get_distance()
    • TreeNode.get_leaves()
    • TreeNode.get_tree_root()
    • TreeNode.is_leaf()
    • TreeNode.is_root()
    • TreeNode.iter_descendants()
    • TreeNode.iter_leaves()
    • TreeNode.iter_prepostorder()
    • TreeNode.iter_search_nodes()
    • TreeNode.search_nodes()
    • TreeNode.support
    • TreeNode.traverse()
    • TreeNode.up
    • TreeNode.write()
  • _get_features_string()
  • _parse_extra_features()
  • _read_newick_from_string()
  • _read_node_data()
  • _translate_nodes()
  • compile_matchers()
  • extract_edge_set()
  • format_node()
  • read_newick()
  • write_newick()

Module contents